These Pumpkin Swirl Muffins are the perfect way to welcome the cozy feelings of autumn into your home. A beautifully spiced pumpkin muffin with a sweet, tangy cream cheese filling, they are a true delight for any fall baking occasion.
I always followed Mom’s recipes by the book, but my sister Jennifer was the artist. I’ll never forget the day she took my plain pumpkin muffins and, with a simple cream cheese swirl, turned them into something truly special.
Why You’ll Fall in Love with These Muffins
- Best of Both Worlds: This recipe perfectly combines the warm spice of pumpkin muffins with the tangy sweetness of a cheesecake-like swirl.
- Simple Technique, Beautiful Results: The elegant swirl is made with just a toothpick and is much easier to achieve than it looks.
- Moist and Tender: The combination of pumpkin purée and oil ensures these filled muffins stay wonderfully moist for days.
- Perfect for Fall: These are the ultimate treat for any autumn gathering, from a chilly morning breakfast to an after-dinner dessert.
The Heart of the Recipe: Your Ingredients
For the Muffins:
- 1 3/4 cups all-purpose flour
- 1 cup granulated sugar
- 1/2 cup brown sugar, packed
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/4 teaspoon ground cloves
- 1/4 teaspoon salt
- 1 cup pumpkin purée
- 1/2 cup vegetable oil
- 2 large eggs
- 1 teaspoon vanilla extract
For the Cream Cheese Swirl:
- 8 oz cream cheese, softened
- 1/3 cup granulated sugar
- 1 teaspoon vanilla extract
A Couple of Helpful Kitchen Tools
Muffin Tin
A standard 12-cup muffin tin is essential for getting that classic, uniform shape we all love.
Hand Mixer
For the creamiest, smoothest pumpkin cream cheese filling, a simple hand mixer works wonders and saves your arm a bit of effort!
Bringing the Muffins to Life, Step by Step
Setting the Stage for a Warm Kitchen
Preheat your oven to 350°F (175°C) and line a muffin tin with paper liners. I always find getting the little things ready first makes the whole baking process feel calm and organized.
Whisking Together the Autumn Spices
In a large bowl, whisk together the flour, both sugars, baking soda, baking powder, cinnamon, nutmeg, cloves, and salt. Giving these a good whisk now ensures you won’t have any pockets of spice later on.
Creating the Heart of the Muffin
In another bowl, whisk the pumpkin purée, oil, eggs, and vanilla until everything is smooth and uniform. Gently stir this wet mixture into the dry ingredients until they are just combined. Be careful not to overmix; a few lumps are perfectly fine!
The Secret to That Creamy Swirl
For the delicious pumpkin cream filling, beat the softened cream cheese, sugar, and vanilla until it’s wonderfully creamy and smooth. Make sure your cream cheese is truly at room temperature to avoid any lumps.
A Little Artistry with a Toothpick
Fill your muffin cups about 2/3 full with the pumpkin batter. Then, add a generous spoonful of the cream cheese mixture right on top. Use a toothpick or a small knife to gently swirl the cream cheese into the batter. Don’t worry about making them perfect, each one will be unique!
Baking Until Your Home Smells of Fall
Bake for 20–22 minutes. You’ll know these delicious pumpkin muffins are ready when a toothpick inserted into the pumpkin part (not the cream cheese!) comes out clean. Your kitchen will smell absolutely heavenly.
Letting Them Rest for a Moment
Let the muffins cool in the tin for a few minutes before moving them to a wire rack. They are wonderful when they’re still slightly warm from the oven.

A Gentle Note on Nutrition
Please note that the nutritional information provided is an estimate and can vary based on the specific ingredients and brands used. This is calculated for one muffin, assuming the recipe yields 12 servings.
For a Lighter, Healthier Touch
- Whole Grains: For a nuttier flavor and extra fiber, you can substitute half of the all-purpose flour with whole wheat flour.
- Reduce the Sugar: You can slightly reduce the granulated sugar in the muffin batter or substitute it with coconut sugar or maple syrup for a more unrefined option.
- Oil Substitutions: For a lighter muffin, try replacing half of the vegetable oil with unsweetened applesauce or plain Greek yogurt.
My Favorite Ways to Enjoy These Muffins
- Warm with Butter: There’s nothing quite like one of these pumpkin cream cheese muffins fresh from the oven, served with a small pat of salted butter that melts right in.
- A Morning Treat: These are the perfect companion to a hot cup of coffee or a spiced chai latte on a cool autumn morning.
- Dusted with Sugar: For an extra touch of elegance, let the muffins cool completely and dust them lightly with powdered sugar before serving.
A Few Little Secrets for Muffin Success
- Using Cold Cream Cheese: Starting with cold cream cheese is the number one cause of a lumpy filling. Be sure to let it sit out on the counter for at least an hour to soften properly.
- Overmixing the Batter: Once you combine the wet and dry ingredients, mix only until you no longer see streaks of flour. Overmixing develops the gluten and can lead to tough, dense muffins instead of light and tender ones.
- Overbaking: Keep a close eye on the muffins as they approach the 20-minute mark. An overbaked muffin can be dry, and you want to preserve that wonderful moistness from the pumpkin.
Storing Your Little Treasures
Because of the cream cheese swirl, these muffins should be stored in an airtight container in the refrigerator. They will stay fresh and delicious for up to 4 days. You can enjoy them cold right from the fridge, or let them sit at room temperature for about 20 minutes to take the chill off.
From My Kitchen to Yours
I hope this Pumpkin Cream Cheese Swirl Muffins recipe brings as much warmth and joy to your kitchen as it does to mine. Baking is about more than just following steps; it’s about creating moments and memories with the people you love. I hope you’ll take this recipe and make it your own, starting a new fall tradition in your home.
A Few Questions You Might Have
Can I use homemade pumpkin purée?
Absolutely! If you have homemade pumpkin purée, it will work beautifully in this recipe. Just be sure to drain it well so it has a similar thick consistency to the canned variety to avoid adding too much moisture to the batter.
Can I add mix-ins like nuts or chocolate chips?
Yes, this is a wonderful recipe for additions! You could fold in about 1/2 cup of chopped pecans, walnuts, or chocolate chips into the pumpkin batter before portioning it into the muffin cups for an extra layer of texture and flavor.
Why did my cream cheese swirl sink to the bottom?
This can sometimes happen if the cream cheese mixture is too thin or if it’s over-swirled into the batter. To prevent this, make sure your pumpkin batter is thick enough to support the filling and swirl very gently, keeping most of the cream cheese near the top.
Print
Pumpkin Swirl Muffins
- Total Time: 37 minutes
- Yield: 12 muffins 1x
- Diet: Vegetarian
Description
These Pumpkin Swirl Muffins are the perfect way to welcome the cozy feelings of autumn into your home. A beautifully spiced pumpkin muffin with a sweet, tangy cream cheese filling, they are a true delight for any fall baking occasion.
Ingredients
- 1 3/4 cups all-purpose flour
- 1 cup granulated sugar
- 1/2 cup brown sugar, packed
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1 teaspoon ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/4 teaspoon ground cloves
- 1/4 teaspoon salt
- 1 cup pumpkin purée
- 1/2 cup vegetable oil
- 2 large eggs
- 1 teaspoon vanilla extract
- 8 oz cream cheese, softened
- 1/3 cup granulated sugar (for cream cheese swirl)
- 1 teaspoon vanilla extract (for cream cheese swirl)
Instructions
- Preheat oven to 350°F (175°C) and line a 12-cup muffin tin with paper liners.
- In a large bowl, whisk together flour, both sugars, baking soda, baking powder, cinnamon, nutmeg, cloves, and salt.
- In a separate bowl, whisk pumpkin purée, oil, eggs, and vanilla until smooth. Stir into dry ingredients until just combined.
- In another bowl, beat cream cheese, 1/3 cup sugar, and 1 tsp vanilla until smooth and creamy.
- Fill muffin cups 2/3 full with pumpkin batter. Spoon a generous amount of cream cheese mixture on top of each and swirl gently with a toothpick.
- Bake for 20–22 minutes or until a toothpick inserted in the muffin (not cream cheese) comes out clean.
- Let muffins cool in the tin for a few minutes, then transfer to a wire rack to cool completely.
Notes
Store in an airtight container in the refrigerator for up to 4 days. Let come to room temperature before serving for best flavor and texture.
- Prep Time: 15 minutes
- Cook Time: 22 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 muffin
- Calories: 285
- Sugar: 20g
- Sodium: 220mg
- Fat: 14g
- Saturated Fat: 5g
- Unsaturated Fat: 8g
- Trans Fat: 0g
- Carbohydrates: 36g
- Fiber: 1g
- Protein: 4g
- Cholesterol: 40mg
Keywords: pumpkin swirl muffins, fall baking, cream cheese, spiced muffins